Michael MacCoss: search on Z-Library

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1

Aminoglycoside antibiotics induce bacterial biofilm formation

Hoffman, Lucas R., D'Argenio, David A., MacCoss, Michael J., Zhang, Zhaoying, Jones, Roger A., Miller, Samuel I.

Journal:

Year:

2005

Language:

english

File:

PDF, 311 KB

english, 2005

2

Isotope Signatures Allow Identification of Chemically Cross-Linked Peptides by Mass Spectrometry: A Novel Method to Determine Interresidue Distances in Protein Structures through Cross-Linking

Zelter, Alex, Hoopmann, Michael R., Vernon, Robert, Baker, David, MacCoss, Michael J., Davis, Trisha N.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.98 MB

english, 2010

3

Initial Guidelines for Manuscripts Employing Data-independent Acquisition Mass Spectrometry for Proteomic Analysis

Chalkley, Robert J., MacCoss, Michael J., Jaffe, Jacob D., Röst, Hannes L.

Journal:

Molecular & Cellular Proteomics

Year:

2019

Language:

english

File:

PDF, 29 KB

english, 2019

4

The Interaction Dynamics of Two Potato Leafroll Virus Movement Proteins Affects Their Localization to the Outer Membranes of Mitochondria and Plastids

DeBlasio, Stacy, Xu, Yi, Johnson, Richard, Rebelo, Ana, MacCoss, Michael, Gray, Stewart, Heck, Michelle

Journal:

Year:

2018

Language:

english

File:

PDF, 10.52 MB

english, 2018

5

The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics

Pino, Lindsay K., Searle, Brian C., Bollinger, James G., Nunn, Brook, MacLean, Brendan, MacCoss, Michael J.

Journal:

Mass Spectrometry Reviews

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

6

Kojak: Efficient Analysis of Chemically Cross-Linked Protein Complexes

Hoopmann, Michael R., Zelter, Alex, Johnson, Richard S., Riffle, Michael, MacCoss, Michael J., Davis, Trisha N., Moritz, Robert L.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.46 MB

english, 2015

7

Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows

Amodei, Dario, Egertson, Jarrett, MacLean, Brendan X., Johnson, Richard, Merrihew, Gennifer E., Keller, Austin, Marsh, Don, Vitek, Olga, Mallick, Parag, MacCoss, Michael J.

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2019

Language:

english

File:

PDF, 1.31 MB

english, 2019

8

Audit logs to enforce document integrity in Skyline and Panorama

Rohde, Tobias, Chupalov, Rita, Shulman, Nicholas, Sharma, Vagisha, Eckels, Josh, Pratt, Brian S, MacCoss, Michael J, MacLean, Brendan X, Luigi Martelli, Pier

Journal:

Year:

2020

File:

PDF, 174 KB

2020

9

Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development

Prakash, Amol, Tomazela, Daniela M., Frewen, Barbara, MacLean, Brendan, Merrihew, Gennifer, Peterman, Scott, MacCoss, Michael J.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.19 MB

english, 2009

10

Kinetochore-associated Stu2 promotes chromosome biorientation in vivo

Miller, Matthew P., Evans, Rena K., Zelter, Alex, Geyer, Elisabeth A., MacCoss, Michael J., Rice, Luke M., Davis, Trisha N., Asbury, Charles L., Biggins, Sue, Copenhaver, Gregory P.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.40 MB

english, 2019

11

Composition of Caenorhabditis elegans extracellular vesicles suggests roles in metabolism, immunity, and aging

Russell, Joshua C., Kim, Taek-Kyun, Noori, Ayush, Merrihew, Gennifer E., Robbins, Julia E., Golubeva, Alexandra, Wang, Kai, MacCoss, Michael J., Kaeberlein, Matt

Journal:

Year:

2020

File:

PDF, 998 KB

2020

12

A Correlation Algorithm for the Automated Quantitative Analysis of Shotgun Proteomics Data

MacCoss, Michael J., Wu, Christine C., Liu, Hongbin, Sadygov, Rovshan, Yates, John R.

Journal:

Analytical Chemistry

Year:

2003

Language:

english

File:

PDF, 334 KB

english, 2003

13

Panorama Public: A public repository for quantitative data sets processed in Skyline

Sharma, Vagisha, Eckels, Josh, Schilling, Birgit, Ludwig, Christina, Jaffe, Jacob D., MacCoss, Michael J., MacLean, Brendan

Journal:

Molecular & Cellular Proteomics

Year:

2018

Language:

english

File:

PDF, 1005 KB

english, 2018

14

The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles

Topalidou, Irini, Cattin-Ortolá, Jérôme, Pappas, Andrea L., Cooper, Kirsten, Merrihew, Gennifer E., MacCoss, Michael J., Ailion, Michael, Chisholm, Andrew D.

Journal:

Year:

2016

Language:

english

File:

PDF, 4.85 MB

english, 2016

15

Comparison between procedures using SDS for shotgun proteomic analyses of complex samples

Michael S. Bereman, Jarrett D. Egertson, Michael J. MacCoss

Journal:

Year:

2011

Language:

english

File:

PDF, 381 KB

english, 2011

16

Divergent Effects of Age on Mitochondrial Function in Fast Twitch and Slow Twitch Skeletal Muscle

Edward Kruse, Shane, Karunadharma, Pabalu, MacCoss, Michael, Rabinovitch, Peter

Journal:

Free Radical Biology and Medicine

Year:

2013

Language:

english

File:

PDF, 76 KB

english, 2013

17

Selection on Plant Male Function Genes Identifies Candidates for Reproductive Isolation of Yellow Monkeyflowers

Aagaard, Jan E., George, Renee D., Fishman, Lila, MacCoss, Michael J., Swanson, Willie J., Bomblies, Kirsten

Journal:

Year:

2013

Language:

english

File:

PDF, 1.92 MB

english, 2013

18

Proteomics: analytical tools and techniques

MacCoss, Michael J., Yates, John R.

Journal:

Current Opinion in Clinical Nutrition & Metabolic Care

Year:

2001

Language:

english

File:

PDF, 108 KB

english, 2001

19

Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0

The, Matthew, MacCoss, Michael J., Noble, William S., Käll, Lukas

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2016

Language:

english

File:

PDF, 632 KB

english, 2016

20

Novel phosphorylation states of the yeast spindle pole body

Fong, Kimberly K., Zelter, Alex, Graczyk, Beth, Hoyt, Jill M., Riffle, Michael, Johnson, Richard, MacCoss, Michael J., Davis, Trisha N.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.99 MB

english, 2018

21

Biomarkers of organophosphorus (OP) exposures in humans

Judit Marsillach, Rebecca J. Richter, Jerry H. Kim, Richard C. Stevens, Michael J. MacCoss, Daniela Tomazela, Stephanie M. Suzuki, Lawrence M. Schopfer, Oksana Lockridge, Clement E. Furlong

Journal:

NeuroToxicology

Year:

2011

Language:

english

File:

PDF, 588 KB

english, 2011

22

Proteogenomic Database Construction Driven from Large Scale RNA-seq Data

Woo, Sunghee, Cha, Seong Won, Merrihew, Gennifer, He, Yupeng, Castellana, Natalie, Guest, Clark, MacCoss, Michael, Bafna, Vineet

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 378 KB

english, 2014

23

A Fast SEQUEST Cross Correlation Algorithm

Eng, Jimmy K., Fischer, Bernd, Grossmann, Jonas, MacCoss, Michael J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.04 MB

english, 2008

24

Proteomic analysis of adducted butyrylcholinesterase for biomonitoring organophosphorus exposures

Marsillach, Judit, Hsieh, Edward J., Richter, Rebecca J., MacCoss, Michael J., Furlong, Clement E.

Journal:

Chemico-Biological Interactions

Year:

2013

Language:

english

File:

PDF, 765 KB

english, 2013

25

Implementation of Statistical Process Control for Proteomic Experiments Via LC MS/MS

Bereman, Michael S., Johnson, Richard, Bollinger, James, Boss, Yuval, Shulman, Nick, MacLean, Brendan, Hoofnagle, Andrew N., MacCoss, Michael J.

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2014

Language:

english

File:

PDF, 478 KB

english, 2014

26

MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments.

Rardin, Matthew J., Schilling, Birgit, Cheng, Lin-Yang, MacLean, Brendan X., Sorenson, Dylan J., Sahu, Alexandria K., MacCoss, Michael J., Vitek, Olga, Gibson, Bradford W.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 3.48 MB

english, 2015

27

A nested mixture model for protein identification using mass spectrometry

Li, Qunhua, MacCoss, Michael J., Stephens, Matthew

Journal:

The Annals of Applied Statistics

Year:

2010

Language:

english

File:

PDF, 1.25 MB

english, 2010

28

Identification of Wiskott-Aldrich syndrome protein (WASP) binding sites on the branched actin filament nucleator Arp2/3 complex

Luan, Qing, Zelter, Alex, MacCoss, Michael J., Davis, Trisha N., Nolen, Brad J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 2.93 MB

english, 2018

29

The ABRF Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analyses

David B. Friedman, Tracy M. Andacht, Maureen K. Bunger, Allis S. Chien, David H. Hawke, Jeroen Krijgsveld, William S. Lane, Kathryn S. Lilley, Michael J. MacCoss, Robert L. Moritz, Robert E. Settlage,

Journal:

Year:

2011

Language:

english

File:

PDF, 741 KB

english, 2011

30

Homopteran Vector Biomarkers for Efficient Circulative Plant Virus Transmission are Conserved in Multiple Aphid Species and the Whitefly Bemisia tabaci

Michelle Cilia, Michael Bereman, Tara Fish, Michael J MacCoss, Stewart Gray

Journal:

Journal of Integrative Agriculture

Year:

2012

Language:

english

File:

PDF, 323 KB

english, 2012

31

Accounting for Population Variation in Targeted Proteomics

Fujimoto, Grant M., Monroe, Matthew E., Rodriguez, Larissa, Wu, Chaochao, MacLean, Brendan, Smith, Richard D., MacCoss, Michael J., Payne, Samuel H.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 322 KB

english, 2014

32

Hyaluronan enhances wound repair and increases collagen III in aged dermal wounds

Damodarasamy, Mamatha, Johnson, Richard S., Bentov, Itay, MacCoss, Michael J., Vernon, Robert B., Reed, May J.

Journal:

Wound Repair and Regeneration

Year:

2014

Language:

english

File:

PDF, 339 KB

english, 2014

33

Multiplexed peptide analysis using data-independent acquisition and Skyline

Egertson, Jarrett D, MacLean, Brendan, Johnson, Richard, Xuan, Yue, MacCoss, Michael J

Journal:

Nature Protocols

Year:

2015

Language:

english

File:

PDF, 5.34 MB

english, 2015

34

Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore–microtubule attachments

Helgeson, Luke A., Zelter, Alex, Riffle, Michael, MacCoss, Michael J., Asbury, Charles L., Davis, Trisha N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

35

High-Speed Data Reduction, Feature Detection, and MS/MS Spectrum Quality Assessment of Shotgun Proteomics Data Sets Using High-Resolution Mass Spectrometry

Hoopmann, Michael R., Finney, Gregory L., MacCoss, Michael J.

Journal:

Analytical Chemistry

Year:

2007

Language:

english

File:

PDF, 469 KB

english, 2007

36

Stable Isotope Labeling Reveals Novel Insights Into Ubiquitin-Mediated Protein Aggregation With Age, Calorie Restriction, and Rapamycin Treatment

Basisty, Nathan B, Liu, Yuxin, Reynolds, Jason, Karunadharma, Pabalu P, Dai, Dao-Fu, Fredrickson, Jeanne, Beyer, Richard P, MacCoss, Michael J, Rabinovitch, Peter S

Journal:

The Journals of Gerontology Series A Biological Sciences and Medical Sciences

Year:

2017

Language:

english

File:

PDF, 1019 KB

english, 2017

37

Quantitative evolutionary proteomics of seminal fluid from primates with different mating systems

Claw, Katrina G., George, Renee D., MacCoss, Michael J., Swanson, Willie J.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.34 MB

english, 2018

38

Kinetochore-associated Stu2 promotes chromosome biorientation in vivo

Miller, Matthew P., Evans, Rena K., Zelter, Alex, Geyer, Elisabeth A., MacCoss, Michael J., Rice, Luke M., Davis, Trisha N., Asbury, Charles L., Biggins, Sue, Copenhaver, Gregory P.

Journal:

Year:

2019

File:

PDF, 2.40 MB

2019

39

Development on Citrus medica infected with âCandidatus Liberibacter asiaticusâ has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts

Coates, Laurynne C., Mahoney, Jaclyn, Ramsey, John S., Warwick, EricaRose, Johnson, Richard, MacCoss, Michael J., Krasnoff, Stuart B., Howe, Kevin J., Moulton, Kathy, Saha, Surya, Mueller, Lukas A., H

Journal:

Year:

2020

File:

PDF, 3.55 MB

2020

40

A method for the comprehensive proteomic analysis of membrane proteins

Wu, Christine C., MacCoss, Michael J., Howell, Kathryn E., Yates, John R.

Journal:

Nature Biotechnology

Year:

2003

Language:

english

File:

PDF, 1.46 MB

english, 2003

41

Characterization of the binding and activity of a high affinity, pseudoirreversible morpholino tachykinin NK1 receptor antagonist

Margaret A Cascieri, Elzbieta Ber, Tung Ming Fong, Jeffrey J Hale, Frank Tang, Lin-Lin Shiao, Sander G Mills, Malcolm MacCoss, Sharon Sadowski, Michael R Tota, Catherine D Strader

Journal:

European Journal of Pharmacology

Year:

1997

Language:

english

File:

PDF, 281 KB

english, 1997

42

Quantitative Comparison of Proteomic Data Quality between a 2D and 3D Quadrupole Ion Trap

Blackler, Adele R., Klammer, Aaron A., MacCoss, Michael J., Wu, Christine C.

Journal:

Analytical Chemistry

Year:

2006

Language:

english

File:

PDF, 378 KB

english, 2006

43

Insights Into the Polerovirus– Plant Interactome Revealed by Coimmunoprecipitation and Mass Spectrometry

DeBlasio, Stacy L., Johnson, Richard, Mahoney, Jaclyn, Karasev, Alexander, Gray, Stewart M., MacCoss, Michael J., Cilia, Michelle

Journal:

Molecular Plant-Microbe Interactions

Year:

2015

Language:

english

File:

PDF, 3.45 MB

english, 2015

44

A targeted proteomic strategy for the measurement of oral cancer candidate biomarkers in human saliva

Kawahara, Rebeca, Bollinger, James G., Rivera, César, Ribeiro, Ana Carolina P., Brandão, Thaís Bianca, Leme, Adriana F. Paes, MacCoss, Michael J.

Journal:

Year:

2016

Language:

english

File:

PDF, 987 KB

english, 2016

45

A High Voltage Asymmetric Waveform Generator for FAIMS

Jesse D. Canterbury, James Gladden, Lon Buck, Roy Olund, Michael J. MacCoss

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2010

Language:

english

File:

PDF, 384 KB

english, 2010

46

MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications

W. Hayes McDonald, David L. Tabb, Rovshan G. Sadygov, Michael J. MacCoss, John Venable, Johannes Graumann, Jeff R. Johnson, Daniel Cociorva, John R. Yates III

Journal:

Rapid Communications in Mass Spectrometry

Year:

2004

Language:

english

File:

PDF, 240 KB

english, 2004

47

Evaluation and Optimization of Ion-Current Ratio Measurements by Selected-Ion-Monitoring Mass Spectrometry

MacCoss, Michael J., Toth, Michael J., Matthews, Dwight E.

Journal:

Analytical Chemistry

Year:

2001

Language:

english

File:

PDF, 98 KB

english, 2001

48

Altered proteome turnover and remodeling by short-term caloric restriction or rapamycin rejuvenate the aging heart

Dai, Dao-Fu, Karunadharma, Pabalu P., Chiao, Ying A., Basisty, Nathan, Crispin, David, Hsieh, Edward J., Chen, Tony, Gu, Haiwei, Djukovic, Danijel, Raftery, Daniel, Beyer, Richard P., MacCoss, Michael

Journal:

Year:

2014

Language:

english

File:

PDF, 1.06 MB

english, 2014

49

Age modifies respiratory complex I and protein homeostasis in a muscle type-specific manner

Kruse, Shane E., Karunadharma, Pabalu P., Basisty, Nathan, Johnson, Richard, Beyer, Richard P., MacCoss, Michael J., Rabinovitch, Peter S., Marcinek, David J.

Journal:

Year:

2016

Language:

english

File:

PDF, 1003 KB

english, 2016

50

Evaluation of a Bead-Free Coimmunoprecipitation Technique for Identification of Virus–Host Protein Interactions Using High-Resolution Mass Spectrometry

DeBlasio, Stacy L., Bereman, Michael S., Mahoney, Jaclyn, Thannhauser, Theodore W., Gray, Stewart M., MacCoss, Michael J., (Cilia) Heck, Michelle

Journal:

Journal of Biomolecular Techniques JBT

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

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